Embedded Files
Complete outlines for the Winter 2023 courses are now online.
Journals
Journals
2020
2020
Change, L., Zhou, G., Soufan, O., Xia, J. (2020). Nucleic acids research (IF: 11.147).
Ewald, J., Soufan, O. Crump, D., Hecker, M., Xia, J. & Basu, N. (2020). Environmental Science & Technology (IF: 7.149).
2019
2019
Menden, M. P., Wang, D., Mason, M. J., Szalai, B., Bulusu, K. C., Guan, Y., ..., AstraZeneca-Sanger Drug Combination DREAM Consortium, … & Nguyen, T. (2019). Nature communications (IF: 11.88)., 10(1), 2674. (Soufan, O. is a member of AstraZeneca-Sanger Drug Combination DREAM Consortium).
Soufan, O., Ewald, J., Viau, C., Crump, D., Hecker, M., Basu, N., & Xia, J. (2019). PeerJ (IF: 2.353). 7, e7975
- Zhao, H., Soufan, O., Xia, J., Tang, R., Li, L., & Li, D. (2019). Aquaculture (IF: 3.022), 503, 186-197.
Zhou, G., Soufan, O., Ewald, J., Hancock, R. E., Basu, N., & Xia, J. (2019). Nucleic acids research (IF: 11.147).
2018
2018
Alazmi, M., Kuwahara, H., Soufan, O., Ding, L., & Gao, X. (2018). Bioinformatics (IF: 4.531).
Chong, J., Soufan, O., Li, C., Caraus, I., Li, S., Bourque, G., Wishart, D.S. & Xia, J. (2018). Nucleic acids research (IF: 11.147).
Soufan, O., Ba-alawi, W., Magana-Mora, A., Essack, M., & Bajic, V. B. (2018). Scientific Reports (IF: 4.011).
2017
2017
Alshahrani, M., Soufan, O., Magana-Mora, A., & Bajic, V. B. Bajic. (2017). PeerJ Computer Science (IF: 3.09)
2016
2016
Ba-alawi, W., Soufan, O., Essack, M., Kalnis, P., & Bajic, V. B. (2016). Journal of Cheminformatics (IF: 4.154)
Soufan, O., Ba-Alawi, W., Afeef, M., Essack, M., Kalnis, P., & Bajic, V. B. (2016). Journal of Cheminformatics (IF: 4.154)
2015
2015
Soufan, O., Ba-Alawi, W., Afeef, M., Essack, M., Rodionov, V., Kalnis, P., & Bajic, V. B. (2015). PLOS ONE (IF: 2.776)
Soufan, O., Kleftogiannis, D., Kalnis, P., & Bajic, V. B. (2015). PLOS ONE (IF: 2.776)
Proceedings, Posters and Talks
Proceedings, Posters and Talks
2019:
- Chang, L., Huiting Ou J., Soufan, O., Zhou, G., & Xia, J. (2019). mGWAS-DB: elucidating genetically influenced metabotypes for mGWAS studies – 8th Annual Canadian Human and Statistical Genetics Meeting (Poster).
- Soufan, O., Zhou, G., Fan, Y., Ewald, J., Hacariz, O., Head, J., Crump, D., Hecker, M., Basu, N. & Xia., J. (2019). EcoToxXplorer: a visual analytics and signature development platform for comprehensive toxicogenomic analysis – SETAC North America 40th Annual Meeting (Talk).
- Soufan, O., Ewald, J., Liu, P., Boulanger, E., Head, J., Crump, D., Hecker, M., Basu, N. & Xia, J. (2019). EcoToxDB: a toxicogenomics knowledgebase to query, browse and interrogate chemical-gene-exposure networks of EcoToxChip experiments – SETAC North America 40th Annual Meeting (Talk).
2017:
- Soufan, O., Dhariwal, A., Fan, Y., Crump, D., Hecker, M., Basu, N., & Xia, J. (2017). ToxMine: A novel toxicogenomics tool integrating chemical structures and gene expression profiles via network methods for improved toxicity assessment. Paper presented at the SETAC Minneapolis – SETAC North America 38th Annual Meeting (Talk).
- Soufan, O., Dhariwal, A., Fan, Y., Crump, D., Hecker, M., Basu, N., & Xia, J. (2017). ToxMine: A novel toxicogenomics tool integrating chemical structures and gene expression profiles via network methods for improved toxicity assessment. Paper presented at the SETAC Minneapolis – SETAC North America 38th Annual Meeting (Poster).
2011:
- Soufan, O., and Arafat, S.: ‘Arrhythmia Detection using Mutual Information Based Integration Method’. Proc. World Conference on Soft Computing, San Francisco, USA 2011.
- Bellegdi, S., Mohandes, S., Soufan, O., and Arafat, S.: ‘Computational Intelligence for Cardiac Arrhythmia Classification’. Proc. The 11th UK Workshop on Computational Intelligence, University of Manchester 2011 pp. 93-97.
Pending Patents and Invention Disclosures
Pending Patents and Invention Disclosures
- Wail Ba-alawi, Othman Soufan, Panos Kalnis, Vladimir Bajic, “A method to predict and rank new edges in a network”. United States Provisional Patent Application No. 62/287,471, Filed January 27, 2016, Applicant: KAUST
- Vladimir Bajic, Othman Soufan, Panos Kalnis, Wail Ba-alawi, A method to predict and rank new edges in a network, Invention #2015-091, Submitted 2015-08-18
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